A year has passed since the Star Force returned to save the Earth but another danger now approaches from deep space. A gigantic White Comet hurtles toward our galaxy, obliterating everything in its path. But it is no ordinary comet - it is the deadly Comet Empire, conqueror of worlds and Earth is the next target! Against orders, the Star Force blasts off to investigate, but even if they can get past the flagship Andromeda, they don't yet know the true nature of their new enemy!

In the distant future, the war between the human race and the Gamilon has taken its toll on the planet Earth. Constant bombardment of radioactive asteroids has rendered the planet's atmosphere uninhabitable. As a means of relief aid, Queen Starsha of the planet Iscandar offers the Earth Forces a device that can completely neutalize the radiation off the planet. For this task, the space battleship Yamato is launched from the remains of its World War II ancestor on a 148,000 light-year journey. However, the crew of the Yamato has only one Earth year to travel to Iscandar and back, or the human race will come to an end.
 
(Source: Anime News Network)

A stray missile from a confrontation between the Galman empire and the Bolar Federation crashes into the sun, turning it into a time bomb of radiation. The Star Force once again sets off into space, this time on a quest to look for a new world for the human race.
 
(Source: Anime News Network)

It is the year 2201. The Yamato has returned from the devastating battle with Emperor Zordar and the Comet Empire. Sanada, Aihara, and Shima are released from the hospital, and go to pay their respects to the fallen crew members at Okita's memorial. They meet Tokugawa's son Tasuke, who says that he will be joining the crew once he graduates from cadet school. The next day at his graduation, he ends up capsizing a boat full of new cadets because they are all too busy staring at the Yamato to watch where they are going. 
After some problems during launch due to the new engine crew hitting the wrong switches and stalling the ship, the Yamato departs on what should be a simple training mission. 
(Source: AniDB)

In the year 2201, one year after the Yamato saved Earth from radioactive contamination, a new threat emerges. The Yamato makes its final journey to save the Earth from this new threat. 
Earth has almost recovered from the battle against Gamilus, and reconstruction has expanded to the other planets. When former Yamato crew-mates discover a strange, garbled message that seems to be coming from a white comet headed towards Earth, they hijack their old space fortress and begin a new battle. 
(Source: AnimeNfo)

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